Sustainability of tools

Tools registry

ELIXIR-LU maintains the following tools and web services.

  • Gene list analysis service
  • bioCompendium: a high-throughput experimental data analysis platform designed to work with large lists of genes or proteins for which it collects a wide spectrum of biological information. (e.g., to prioritize potential targets from gene expression analysis studies or from RNAi studies)

  • Protein sequence analysis
  • PredictProtein: to analyse protein sequence to predict protein function and structure

  • Databases
  • Human-gDB: a database of human G-Proteins, human G protein-coupled receptors (GPCRs), their effectors and their interactions
  • HIV Mutation Browser: a database of mutagenesis and mutation information on the Human Immunodeficiency Virus (HIV)

  • Visual analytics tools
  • Arena3D: to visualize biological networks with multilayered graphs and to analyse big networks in a three-dimensional space representation
  • PhenoTimer: to visualise time-resolved biological data and make sense out of gene-phenotype relations in a temporal context
  • SmartR: to visualise and analyse data within tranSMART in a highly dynamic and interactive manner.

  • SBML map annotation service
  • MapAnnotator: Parkinson’s Disease Map annotation service